Importance of Physicochemical Properties In Drug Discovery. (Review Article)
Downloads
Drug discovery is a complex and demanding enterprise. In recent years there has been a significant discussion on discovery and developmental processes for new chemical entities, wherein various parameters like PK, toxicity, solubility, stability are addressed. The, 'Rule of Five', gained wide acceptance as an approach to reduce attrition in drug discovery and development. However, analysis of recent trends reveals that the physical properties of molecules that are currently being synthesized in leading drug discovery companies differ significantly from those of recently discovered oral drugs and compounds in clinical development. The consequences of the marked deviation in the physicochemical properties result in a greater likelihood of lack of selectivity and attrition in drug development. Tackling the threat of compound-related toxicological attrition needs to move to the mainstream of medicinal chemistry decision-making. The impacts of these rules on oral absorption are discussed, and approaches are suggested for the prediction, assessment and communication,of,absorption-related, physicochemical properties in drug discovery and exploratory development. This review is based on how physicochemical properties of compounds can be optimized for drug discovery.
Book References:
Beale, John M., and John Block. Organic
medicinal and pharmaceutical chemistry.
Lippincott Williams & Wilkins, 2010.
Brahmankar, D. M., and Sunil B.
Jaiswal. Biopharmaceutics and
pharmacokinetics: A treatise. Vallabh
prakashan, 2005.
Foye, William O. Foye's principles of
medicinal chemistry. Eds. Thomas L.
Lemke, and David A. Williams. Lippincott
Williams & Wilkins, 2008.
Kerns, Edward, and Li Di. Drug-like
properties: concepts, structure design and
methods: from ADME to toxicity
optimization. Academic Press, 2010
Article References:
Abraham, Michael H., et al.
"Determination of solute lipophilicity, as
log< i> P(octanol) and log< i>
P(alkane) using poly (styrene–
divinylbenzene) and immobilised artificial
membrane stationary phases in reversedphase
high-performance liquid
chromatography." Journal of
Chromatography A 766.1 (1997): 35-47.
Ashwood, Valerie A., et al. "Utilization of
an intramolecular hydrogen bond to
increase the CNS penetration of an NK1
receptor antagonist." Journal of medicinal
chemistry 44.14 (2001): 2276-2285.
Avdeef, Alex. "Physicochemical profiling
(solubility, permeability and charge
state)." Current topics in medicinal
chemistry 1.4 (2001): 277-351.
Bighley, Philip L. "Salt selection for basic
drugs." International Journal of
Pharmaceutics 33.1 (1995): 201-217.
Birkett, Donald J. (2002).
Pharmacokinetics made easy. Sydney:
McGraw-Hill.
Borgos, Sven EF, et al. "Probing the
structure-function relationship of polyene
macrolides: engineered biosynthesis of
soluble nystatin analogues." Journal of
medicinal chemistry 49.8 (2006): 2431-
Chen, Ping, et al. "Imidazoquinoxaline
Src-family kinase p56Lck inhibitors: SAR,
QSAR, and the discovery of (S)-N-(2-
chloro-6-methylphenyl)-2-(3-methyl-1-
piperazinyl) imidazo-[1, 5-a] pyrido [3, 2-
e] pyrazin-6-amine (BMS-279700) as a
potent and orally active inhibitor with
excellent in vivo antiinflammatory
activity." Journal of medicinal
chemistry 47.18 (2004): 4517-4529.
Cheng, Menyan, et al. "Design and
synthesis of piperazine-based matrix
metalloproteinase inhibitors." Journal of
medicinal chemistry 43.3 (1999): 369-380.
Clark, David E. "< i> In silico
prediction of blood–brain barrier
permeation."Drug discovery today 8.20
(2003): 927-933.
Comer, John, and Kin Tam. "Lipophilicity
profiles: theory and measurement."Testa,
B.; van de Waterbeemd, H.; Folkers,
G (2001): 275-304.
Di, Li, and Edward H. Kerns. "Application
of physicochemical data to support lead
optimization by discovery
teams." Optimizing the “drug-like”
properties of leads in drug discovery.
Springer New York, 2006. 167-193.
Di, Li, and Edward H. Kerns. Methods for
Assessing Blood–Brain Barrier
Penetration in Drug Discovery. John
Wiley & Sons, New York, 2011.
Di, Li, et al. "Evidence-based approach to
assess passive diffusion and carrier-mediated drug transport." Drug discovery
today 17.15 (2012): 905-912.
Di, Li, et al. "High throughput artificial
membrane permeability assay for blood–
brain barrier." European journal of
medicinal chemistry 38.3 (2003): 223-232.
Ducharme, Yves, et al. "2, 3-
Diarylthiophenes as selective EP< sub>
receptor antagonists." Bioorganic
& medicinal chemistry letters 15.4 (2005):
-1160.
Ellens, Harma, et al. "In vitro permeability
screening for identification of orally
bioavailable endothelin receptor
antagonists." Advanced drug delivery
reviews23.1 (1997): 99-109.
Goodwin, Jay T., and David E. Clark. "In
silico predictions of blood-brain barrier
penetration: considerations to “keep in
mind”." Journal of Pharmacology and
Experimental Therapeutics 315.2 (2005):
-483.
Goodwin, Jay T., et al. "Physicochemical
determinants of passive membrane
permeability: role of solute hydrogenbonding
potential and volume." Journal of
medicinal chemistry 44.22 (2001): 3721-
Hann, Mike M., and Tudor I. Oprea.
"Pursuing the leadlikeness concept in
pharmaceutical research." Current opinion
in chemical biology 8.3 (2004): 255-263.
Hansch, Corwin, et al. "Qsar and
Adme." Bioorganic & medicinal
chemistry12.12 (2004): 3391-3400.
Johanson, Conrad E., et al. "Enhanced
prospects for drug delivery and brain
targeting by the choroid plexus–CSF
route." Pharmaceutical research 22.7
(2005): 1011-1037.
John Arrowsmith & Philip Miller; Trial
Watch: Phase II and Phase III attrition
rates 2011–2012; Nature Reviews Drug
Discovery 12, 569, (2013).
Kassel, Daniel B. "Applications of highthroughput
ADME in drug
discovery."Current opinion in chemical
biology 8.3 (2004): 339-345.
Kerns, E. H., & Di, L. (2003).
Pharmaceutical profiling in drug
discovery. Drug discovery today, 8(7),
-323.
Kerns, E. H., and L. Di. "Physicochemical
profiling: overview of the screens."Drug
Discovery Today: Technologies 1.4 (2004):
-348.
Kerns, Edward H. "High throughput
physicochemical profiling for drug
discovery." Journal of pharmaceutical
sciences 90.11 (2001): 1838-1858.
Lee, Yung-Chi, Philip D. Zocharski, and
Brian Samas. "An intravenous formulation
decision tree for discovery compound
formulation development."International
journal of pharmaceutics 253.1 (2003): 111-
Li, Ying, et al. "Artemisinin derivatives:
synthesis and antimalarial
activity." Bioorganic & medicinal chemistry
20 (2003): 4363-4368.
Lin, Jiunn H., and Anthony YH Lu. "Role of
pharmacokinetics and metabolism in drug
discovery and development."
Pharmacological
reviews 49.4 (1997): 403-449.
Lin, Jiunn H., and Anthony YH Lu. "Role of
pharmacokinetics and metabolism in drug
discovery and development."
Pharmacological
reviews 49.4 (1997): 403-449.
Lipinski, C. A. (2000). Drug-like properties
and the causes of poor solubility and poor
permeability. Journal of
pharmacological and toxicological
methods, 44(1), 235-249.
Lipinski, Christopher A. "Drug-like
properties and the causes of poor solubility
and poor permeability." Journal of
pharmacological and toxicological
methods44.1 (2000): 235-249.
Lipinski, Christopher A. "Lead-and druglike
compounds: the rule-of-five
revolution." Drug Discovery Today:
Technologies 1.4 (2004): 337-341.
Lipinski, Christopher A., et al.
"Experimental and computational
approaches to estimate solubility and
permeability in drug discovery and
development settings." Advanced drug
delivery reviews 64 (2012): 4-17.
Lipper, ROBERT A. "How can we optimize
selection of drug development candidates
from many
Liu, Xingrong, et al. "Unbound drug
concentration in brain homogenate and
cerebral spinal fluid at steady state as a
surrogate for unbound concentration in
brain interstitial fluid." Drug Metabolism
and Disposition 37.4 (2006): 787-793.
Lobell, Mario, László Molnár, and György
M. Keserü. "Recent advances in the prediction of blood–brain partitioning
from molecular structure." Journal of
pharmaceutical sciences 92.2 (2003): 360-
Lombardo, Franco, et al. "Prediction of
volume of distribution values in humans
for neutral and basic drugs using
physicochemical measurements and plasma
protein binding data." Journal of medicinal
chemistry 45.13 (2002): 2867- 2876.
Martin, Alfred N., James Swarbrick, and
Arthur Cammarata. "Physical pharmacy:
physical chemical principles in the
pharmaceutical sciences." (1993).
Maurer, Tristan S., et al. "Relationship
between exposure and nonspecific binding
of thirty-three central nervous system drugs
in mice." Drug metabolism and disposition
1 (2005): 175-181.
Nikam, Sham S., et al. "Design and
synthesis of novel quinoxaline-2, 3-dione
AMPA/GlyN receptor antagonists:
amino acid derivatives." Journal of
medicinal chemistry 42.12 (1999):
-2271.
Oprea, Tudor I. "Current trends in lead
discovery: Are we looking for the
appropriate properties?." Journal of
computer-aided molecular design 16.5-6
(2002): 325-334.
Pardridge, William M. "Crossing the blood–
brain barrier: are we getting it right?." Drug
discovery today 6.1 (2001): 1-2.
Pardridge, William M. "Transport of small
molecules through the blood-brain barrier:
biology and methodology." Advanced drug
delivery reviews 15.1 (1995): 5-36.
Pelkonen, R. Olavi, Andreas Baumann, and
Anhreas Reichel. Pharmacokinetic
challenges in drug discovery. Vol. 37.
Springer Verlag, 2002.
Rekker, Roelof F., and Raimund Mannhold.
Calculation of drug
lipophilicity: the hydrophobic fragmental
constant approach. Wiley-VCH, 1992.
Roda, Aldo, et al. "Synthesis and
physicochemical, biological, and
pharmacological properties of new bile
acids amidated with cyclic amino
acids."Journal of medicinal
chemistry 39.11 (1996): 2270-2276.
Rowland, Malcolm, Carl Peck, and Geoffrey
Tucker. "Physiologically-based
pharmacokinetics in drug development and
regulatory science." Annual review of
pharmacology and toxicology 51 (2011): 45-
Rubin, L. L., and J. M. Staddon. "The cell
biology of the blood-brain barrier."Annual
review of neuroscience 22.1 (1999): 11-28.
Smith D. A. (2002). Ernst Schering
Research Foundation Workshop, 37, 203-
Stella, Valentino J. "A case for prodrugs:
fosphenytoin." Advanced drug delivery
reviews 19.2 (1996): 311-330.
Stenberg, Patric, et al. "Theoretical
predictions of drug absorption in drug
discovery and development." Clinical
pharmacokinetics 41.11 (2002): 877-899.
Van de Waterbeemd, H., Smith, D. A.,
Beaumont, K., & Walker, D. K. (2001).
Property Based Design: Optimisation of
drug absorption and pharmacokinetics.
Journal of Medicinal Chemistry, 44, 1313-
van de Waterbeemd, Han. "The fundamental
variables of the biopharmaceutics
classification system (BCS): a
commentary." Eur. J. Pharm. Sci 7 (1998):
-3.
Veber, Daniel F., et al. "Molecular
properties that influence the oral
bioavailability of drug
candidates." Journal of medicinal chemistry
12 (2002): 2615-2623.
Venkatesh, Srini, and Robert A. Lipper.
"Role of the development scientist in
compound lead selection and
optimization." Journal of pharmaceutical
sciences89.2 (2000): 145-154.
Wei, Zhong-Yong, et al. "N, N-Diethyl-4-
(phenylpiperidin-4-ylidenemethyl)
benzamide: a novel, exceptionally
selective, potent δ opioid receptor agonist
with oral bioavailability and its
analogues." Journal of Medicinal
chemistry 43.21 (2000): 3895-3905.
William M. Pardridge, Transport of small
molecules through the blood-brain barrier:
biology and methodology, Advanced Drug Delivery Reviews, Volume 15, Issues 1–3,
July 1995, Pages 5-36.
Wu, Chi-Yuan, and Leslie Z. Benet.
"Predicting drug disposition via application
of BCS:
transport/absorption/elimination interplay
and development of a biopharmaceutics
drug disposition classification
system." Pharmaceutical research 22.1
(2005): 11-23.
Xie, Lan, et al. "Anti-AIDS Agents."
Journal of medicinal
Chemistry 42.14 (2004): 2662-2672.
Yalkowsky, Samuel Hyman, and Sujit
Banerjee. Aqueous solubility: Methods of
estimation for organic compounds. New
York: Marcel Dekker, 1992.
Zhang, Yuanchao, and Leslie Z. Benet. "The
gut as a barrier to drug absorption." Clinical
pharmacokinetics 40.3 (2001): 159- 168.
All Content should be original and unpublished.